1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
|
#!/usr/bin/perl
# quick, very dirty little script so that we can put all the
# information for building a residue book set (except the original
# partitioning) in one spec file.
#eg:
# >res0_128_128 interleaved
# haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
# :1 res0_128_128_1.vqd, 4, nonseq cull, 0 +- 1
# :2 res0_128_128_2.vqd, 4, nonseq, 0 +- 1(.7) 2
# :3 res0_128_128_3.vqd, 4, nonseq, 0 +- 1(.7) 3 5
# :4 res0_128_128_4.vqd, 2, nonseq, 0 +- 1(.7) 3 5 8 11
# :5 res0_128_128_5.vqd, 1, nonseq, 0 +- 1 3 5 8 11 14 17 20 24 28 31 35 39
die "Could not open $ARGV[0]: $!" unless open (F,$ARGV[0]);
$goflag=0;
while($line=<F>){
print "#### $line";
if($line=~m/^GO/){
$goflag=1;
next;
}
if($goflag==0){
if($line=~m/\S+/ && !($line=~m/^\#/) ){
my $command=$line;
print ">>> $command";
die "Couldn't shell command.\n\tcommand:$command\n"
if syst($command);
}
next;
}
# >res0_128_128
if($line=~m/^>(\S+)\s+(\S*)/){
# set the output name
$globalname=$1;
$interleave=$2;
next;
}
# haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
if($line=~m/^h(.*)/){
# build a huffman book (no mapping)
my($name,$datafile,$bookname,$interval,$range)=split(' ',$1);
# check the desired subdir to see if the data file exists
if(-e $datafile){
my $command="cp $datafile $bookname.tmp";
print ">>> $command\n";
die "Couldn't access partition data file.\n\tcommand:$command\n"
if syst($command);
my $command="huffbuild $bookname.tmp $interval";
print ">>> $command\n";
die "Couldn't build huffbook.\n\tcommand:$command\n"
if syst($command);
my $command="rm $bookname.tmp";
print ">>> $command\n";
die "Couldn't remove temporary file.\n\tcommand:$command\n"
if syst($command);
}else{
my $command="huffbuild $bookname.tmp 0-$range";
print ">>> $command\n";
die "Couldn't build huffbook.\n\tcommand:$command\n"
if syst($command);
}
next;
}
# :1 res0_128_128_1.vqd, 4, nonseq, 0 +- 1
if($line=~m/^:(.*)/){
my($namedata,$dim,$seqp,$vals)=split(',',$1);
my($name,$datafile)=split(' ',$namedata);
# build value list
my$plusminus="+";
my$list;
my$thlist;
my$count=0;
foreach my$val (split(' ',$vals)){
if($val=~/\-?\+?\d+/){
my$th;
# got an explicit threshhint?
if($val=~/([0-9\.]+)\(([^\)]+)/){
$val=$1;
$th=$2;
}
if($plusminus=~/-/){
$list.="-$val ";
if(defined($th)){
$thlist.="," if(defined($thlist));
$thlist.="-$th";
}
$count++;
}
if($plusminus=~/\+/){
$list.="$val ";
if(defined($th)){
$thlist.="," if(defined($thlist));
$thlist.="$th";
}
$count++;
}
}else{
$plusminus=$val;
}
}
die "Couldn't open temp file $globalname$name.vql: $!" unless
open(G,">$globalname$name.vql");
print G "$count $dim 0 ";
if($seqp=~/non/){
print G "0\n$list\n";
}else{
print G "1\n$list\n";
}
close(G);
my $command="latticebuild $globalname$name.vql > $globalname$name.vqh";
print ">>> $command\n";
die "Couldn't build latticebook.\n\tcommand:$command\n"
if syst($command);
if(-e $datafile){
if($interleave=~/non/){
$restune="res1tune";
}else{
$restune="res0tune";
}
if($seqp=~/cull/){
my $command="$restune $globalname$name.vqh $datafile 1 > temp$$.vqh";
print ">>> $command\n";
die "Couldn't tune latticebook.\n\tcommand:$command\n"
if syst($command);
}else{
my $command="$restune $globalname$name.vqh $datafile > temp$$.vqh";
print ">>> $command\n";
die "Couldn't tune latticebook.\n\tcommand:$command\n"
if syst($command);
}
my $command="mv temp$$.vqh $globalname$name.vqh";
print ">>> $command\n";
die "Couldn't rename latticebook.\n\tcommand:$command\n"
if syst($command);
}else{
print "No matching training file; leaving this codebook untrained.\n";
}
my $command="rm $globalname$name.vql";
print ">>> $command\n";
die "Couldn't remove temp files.\n\tcommand:$command\n"
if syst($command);
next;
}
}
$command="rm -f temp$$.vqd";
print ">>> $command\n";
die "Couldn't remove temp files.\n\tcommand:$command\n"
if syst($command);
sub syst{
system(@_)/256;
}
|
